Cartoon of a BD simulation path 

Tutorials

The cartoon illustrates a single BD time-evolution pathway of a one protein through another protein's electrostatic field, ending in formation of a binding complex.

Online Tutorial Table of Contents

  1. Importing Proteins into MacroDox and Assigning Charges html pdf
  2. Calculating the Electrostatic Field around a Protein html pdf
  3. Preparing a Second Protein for BD html pdf
  4. Setting Up and Running BD Simulations html pdf
  5. Analyzing a BD Simulation html pdf
  6. Using the BD Helix Algorithm html pdf

Web design by Kristine L. Carlson. Page Updated January 2007.